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	<title>Jabberwocky Ecology &#124; Weecology&#039;s Blog &#187; props</title>
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	<link>http://jabberwocky.weecology.org</link>
	<description>Ethan White’s and Morgan Ernest’s blog for discussing issues and ideas related to ecology and academia.</description>
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		<title>Jabberwocky Ecology &#124; Weecology&#039;s Blog &#187; props</title>
		<link>http://jabberwocky.weecology.org</link>
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		<title>Michael Nielsen on the importance and value of Open Science</title>
		<link>http://jabberwocky.weecology.org/2011/07/13/michael-nielsen-on-the-importance-and-value-of-open-science/</link>
		<comments>http://jabberwocky.weecology.org/2011/07/13/michael-nielsen-on-the-importance-and-value-of-open-science/#comments</comments>
		<pubDate>Wed, 13 Jul 2011 21:26:14 +0000</pubDate>
		<dc:creator>Morgan &#38; Ethan</dc:creator>
				<category><![CDATA[creativity]]></category>
		<category><![CDATA[data]]></category>
		<category><![CDATA[productivity]]></category>
		<category><![CDATA[props]]></category>
		<category><![CDATA[publishing]]></category>
		<category><![CDATA[science]]></category>

		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=741</guid>
		<description><![CDATA[We are pretty excited about what modern technology can do for science and in particular the potential for increasingly rapid sharing of, and collaboration on, data and ideas. It&#8217;s the big picture that explains why we like to blog, tweet, publish data and code, and we&#8217;ve benefited greatly from others who do the same. So, [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=741&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>We are pretty excited about what modern technology can do for science and in particular the potential for increasingly rapid sharing of, and collaboration on, data and ideas. It&#8217;s the big picture that explains why we like to <a href="http://jabberwocky.weecology.org" target="_blank">blog</a>, <a href="https://twitter.com/#!/ethanwhite" target="_blank">tweet</a>, publish <a href="http://www.esapubs.org/archive/ecol/E090/118/default.htm" target="_blank">data</a> and <a href="https://github.com/croryx/retriever" target="_blank">code</a>, and we&#8217;ve benefited greatly from others who do the same. So, when we saw this great talk by Michael Nielsen about Open Science, we just had to share.</p>
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<p>(via, appropriately enough, <a href="https://twitter.com/#!/gvwilson" target="_blank">@gvwilson</a> and <a href="https://twitter.com/#!/TEDxWaterloo" target="_blank">@TEDxWaterloo</a> on <a href="http://twitter.com/" target="_blank">Twitter</a>)</p>
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		<slash:comments>4</slash:comments>
	
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			<media:title type="html">ernite</media:title>
		</media:content>
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		<item>
		<title>Oikos has a blog? [Blogrolling]</title>
		<link>http://jabberwocky.weecology.org/2011/04/27/oikos-has-a-blog-blogrolling/</link>
		<comments>http://jabberwocky.weecology.org/2011/04/27/oikos-has-a-blog-blogrolling/#comments</comments>
		<pubDate>Wed, 27 Apr 2011 15:50:45 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[creativity]]></category>
		<category><![CDATA[ecology]]></category>
		<category><![CDATA[graduate students]]></category>
		<category><![CDATA[props]]></category>
		<category><![CDATA[publishing]]></category>
		<category><![CDATA[science]]></category>
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		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=688</guid>
		<description><![CDATA[Thanks to an email from Jeremy Fox I just found out that Oikos has started a blog. It clearly isn&#8217;t on most folks radars (I represent 50% of its Google Reader subscribers), and Jeremy has been putting up some really interesting posts over there so I thought it was worth a mention. According to Jeremy: [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=688&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Thanks to an email from <a href="http://homepages.ucalgary.ca/~jefox/Home.htm">Jeremy Fox</a> I just found out that <a href="http://oikosjournal.wordpress.com/">Oikos has started a blog</a>. It clearly isn&#8217;t on most folks radars (I represent 50% of its Google Reader subscribers), and Jeremy has been putting up some really interesting posts over there so I thought it was worth a mention. According to Jeremy:</p>
<blockquote><p>I view the Oikos blog as a place where the Oikos editors can try to do the sort of wonderful armchair ecology that John [Lawton] used to do in his &#8216;View From the Park&#8217; column. I say &#8216;try&#8217; because I doubt any of us could live up to John&#8217;s high standard (I&#8217;m sure I don&#8217;t!). I&#8217;m going to try to do posts that will be thought-provoking for students in particular. Oikos used to be the place to go with interesting, provocative ideas that were well worth publishing even if they were a bit off the wall or not totally correct. It&#8217;s our hope (well, my hope anyway) that this blog will become one way for Oikos to reclaim that niche.</p></blockquote>
<p>I think they&#8217;re doing a pretty good job of accomplishing their goal, so go check out recent posts on <a href="http://oikosjournal.wordpress.com/2011/04/26/the-art-of-hand-waving/">the importance of hand waving</a> and <a href="http://oikosjournal.wordpress.com/2011/04/21/synthesizing-ecology-revisiting-an-oikos-classic/">synthesizing ecology</a>, and then think about subscribing to keep up on the new provocative things they&#8217;re up to.</p>
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		<slash:comments>9</slash:comments>
	
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			<media:title type="html">Ethan</media:title>
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		<title>A GitHub of Science? [Things you should read]</title>
		<link>http://jabberwocky.weecology.org/2011/04/18/a-github-of-science-things-you-should-read/</link>
		<comments>http://jabberwocky.weecology.org/2011/04/18/a-github-of-science-things-you-should-read/#comments</comments>
		<pubDate>Mon, 18 Apr 2011 14:45:06 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[computers]]></category>
		<category><![CDATA[data]]></category>
		<category><![CDATA[ecology]]></category>
		<category><![CDATA[productivity]]></category>
		<category><![CDATA[programming]]></category>
		<category><![CDATA[props]]></category>
		<category><![CDATA[publishing]]></category>
		<category><![CDATA[science]]></category>
		<category><![CDATA[things you should read]]></category>

		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=671</guid>
		<description><![CDATA[There is an excellent post on open science, prestige economies, and the social web over at Marciovm&#8217;s posterous*. For those of you who aren&#8217;t insanely nerdy** GitHub is&#8230; well&#8230; let&#8217;s just call it a very impressive collaborative tool for developing and sharing software***. But don&#8217;t worry, you don&#8217;t need to spend your days tied to a computer [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=671&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>There is <a href="http://marciovm.com/i-want-a-github-of-science" target="_blank">an excellent post</a> on open science, prestige economies, and the social web over at <a href="http://marciovm.com/">Marciovm&#8217;s posterous</a>*. For those of you who aren&#8217;t insanely nerdy** <a href="https://github.com/" target="_blank">GitHub</a> is&#8230; well&#8230; let&#8217;s just call it a very impressive collaborative tool for developing and sharing software***. But don&#8217;t worry, you don&#8217;t need to spend your days tied to a computer or have any interest in writing your own software to enjoy gems like:</p>
<blockquote><p>Evangelists for Open Science should focus on promoting new, post-publication prestige metrics that will properly incentivize scientists to focus on the utility of their work, which will allow them to start worrying less about publishing in the right journals.</p></blockquote>
<p>Thanks to <a href="http://twitter.com/cboettig" target="_blank">Carl Boettiger</a> for pointing me to the post. It&#8217;s definitely worth reading <a href="http://marciovm.com/i-want-a-github-of-science" target="_blank">in its entirety</a>.</p>
<p>_______________________________________________________</p>
<p>*A blog I&#8217;d never heard of before, but I subscribed to it&#8217;s RSS feed before I&#8217;d even finished the entire post.</p>
<p>**As far as biologists go. And, yes, when I say &#8220;insanely nerdy&#8221; I do mean it as a complement.</p>
<p>***For those interested in slightly more detail it&#8217;s a social application wrapped around the popular distributed version control system named <a href="http://git-scm.com/" target="_blank">Git</a>. Kind of like <a href="http://sourceforge.net/" target="_blank">Sourceforge</a> on steroids.</p>
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		<slash:comments>0</slash:comments>
	
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			<media:title type="html">Ethan</media:title>
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		<title>Journal Article 2.0</title>
		<link>http://jabberwocky.weecology.org/2010/02/26/journal-article-2-0/</link>
		<comments>http://jabberwocky.weecology.org/2010/02/26/journal-article-2-0/#comments</comments>
		<pubDate>Fri, 26 Feb 2010 22:29:10 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[computers]]></category>
		<category><![CDATA[props]]></category>
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		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=384</guid>
		<description><![CDATA[Cell Press has recently announced what I considered to be the most interesting advance in journal publishing since articles started being posted online. Basically they have started to harness the power of the web to aggregate the information present in in articles in more useful and efficient ways. For example, there is a Data tab [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=384&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Cell Press has recently announced what I considered to be the most interesting advance in journal publishing since articles started being posted online. Basically they have started to harness the power of the web to aggregate the information present in in articles in more useful and efficient ways. For example, there is a Data tab for each article that provides an overview of all figures, and large amounts of information on the selected figure including both it&#8217;s caption and the actual context for its citation from the text. Raw data files are also readily accessible from this same screen. References are dynamically expandable to show their context in the text (without refreshing, which is awesome), filterable by year or author, and linked directly to the original publication. You&#8217;ll also notice an comments tab where editor moderated comments related to be paper will be posted (showing the kind of <a href="http://jabberwocky.weecology.org/2010/02/16/american-naturalist-adds-online-forum/">integrated commenting system</a> that I expect we will see everywhere eventually).</p>
<p>I have seen a lot of discussion of how the web is going to revolutionize publishing, but to quote one of <a href="http://www.imdb.com/title/tt0379786/">my favorite movies</a> &#8220;Talking ain&#8217;t doing.&#8221; Cell Press is actually doing.</p>
<p>I&#8217;d strongly encourage you to check out their <a href="http://beta.cell.com/index.php/2010/01/cell-launches-article-of-the-future-format/">blog post and video</a> and then go play around with one of the <a href="http://www.cell.com/abstract/S0092-8674(09)01439-1">articles in the new format</a>. This is really exciting stuff.</p>
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			<media:title type="html">Ethan</media:title>
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		<title>Ideas in Ecology and Evolution</title>
		<link>http://jabberwocky.weecology.org/2010/01/11/ideas-in-ecology-and-evolution/</link>
		<comments>http://jabberwocky.weecology.org/2010/01/11/ideas-in-ecology-and-evolution/#comments</comments>
		<pubDate>Tue, 12 Jan 2010 04:36:33 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[ecology]]></category>
		<category><![CDATA[props]]></category>
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		<description><![CDATA[I just read the excellently forward thinking year end editorial of the new journal Ideas in Ecology and Evolution. The editorial was written by Lonnie Aarssen and Christopher Lortie and is filled with Aarssen&#8217;s trademark,creative, outside the proverbial box, thinking. In this case it applies to the field of scientific publishing, the things they&#8217;ve tried [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=322&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I just read the excellently forward thinking <a href="http://library.queensu.ca/ojs/index.php/IEE/article/view/2198" target="_blank">year end editorial</a> of the new journal <a href="http://library.queensu.ca/ojs/index.php/IEE/index" target="_blank">Ideas in Ecology and Evolution</a>. The editorial was written by Lonnie Aarssen and Christopher Lortie and is filled with Aarssen&#8217;s trademark,creative, outside the proverbial box, thinking. In this case it applies to the field of scientific publishing, the things they&#8217;ve tried to change with their new journal and those attempts that have failed and required rethinking. There are a lot of great ideas embodied in this editorial and <a href="http://library.queensu.ca/ojs/index.php/IEE/article/view/1949" target="_blank">that from the launch of the journal</a> the previous year.</p>
<p><span id="more-322"></span></p>
<p>My personal favorite relates to how they intend to, and to some degree succeed in, conducting peer review. Their original plan was for completely open peer review, where the identities of the reviewers would not only be known to the authors, but actually formally attached to the manuscript if it was published. I think that this is an excellent idea. A great deal of harm has been done to the scientific process due to the anonymity of reviewers. If someone decides that they &#8220;don&#8217;t like&#8221; a paper (or the person writing the paper), they can simply proceed to shoot it down based on poorly reasoned arguments with practically no responsibility for doing so. On the flip side, if someone likes the message of a paper even if that paper contains obvious technical flaws, they can write a glowing review without concern that their support for the paper will reflect badly on them. This system places the reviewer in a situation where they are actually <em>responsible</em> for the content of their review, thus forcing them to attempt to provide a balanced and honest assessment of the manuscript. This also conveniently addresses the common argument that, because they want to avoid retaliation by angry authors, reviewers will be hesitant to be appropriately critical if their identities are not kept secret.</p>
<p>Of course this represents an additional burden on the reviewers because they are no longer agreeing to simply throw together an evaluation that&#8217;s probably, sort of, mostly, accurate and kind of well justified; they are putting together a carefully reasoned opinion that they are being asked to stand behind. In order to compensate reviewers for this effort IEE originally planned to pay reviewers for their efforts ($150 Canadian). This, unfortunately, is where their brilliant plan failed. In order to finance this payment authors would be required to pay a submission fee, <a href="http://news.cnet.com/8301-17938_105-9796217-1.html" target="_blank">irregardless</a> of whether their manuscript was published or not. This was apparently a bit much to ask of the average author and the journal has been forced to change its policy on paying for reviews. However, the plan for open review is still in place and I for one want to applaud Aarssen and IEE for thinking seriously about ways to actually improve the state of the scientific publication system.</p>
<p>There are a number of other interesting ideas in the editorials and I would encourage you to take the time to read them both. As with the articles the journal hopes to publish, there are things in these two editorials that are controversial, including some that I disagree with fairly strongly†, but there is no doubt that this is some of the most creative thinking about the scientific publishing process that has been done in a long time.</p>
<h6><span style="font-weight:normal;">†e.g., Please don&#8217;t send me an email every time you publish a paper just to let me know that it&#8217;s been published. That will very quickly lead to all of your email getting added to my spam filter because if everyone who publishes work in my general areas of research sends me an email every time they publish a paper, well&#8230; read the last paragraph of </span><a href="http://jabberwocky.weecology.org/2009/08/17/a-message-to-journal-editorsmanagers-about-rss-feeds/" target="_blank"><span style="font-weight:normal;">this post</span></a><span style="font-weight:normal;"> and then use your imagination.</span></h6>
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