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	<title>Jabberwocky Ecology &#124; Weecology&#039;s Blog &#187; rant</title>
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	<description>Ethan White’s and Morgan Ernest’s blog for discussing issues and ideas related to ecology and academia.</description>
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		<title>Jabberwocky Ecology &#124; Weecology&#039;s Blog &#187; rant</title>
		<link>http://jabberwocky.weecology.org</link>
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		<title>Why computer labs should never be controlled by individual colleges/departments</title>
		<link>http://jabberwocky.weecology.org/2011/06/27/why-computer-labs-should-never-be-controlled-by-individual-collegesdepartments/</link>
		<comments>http://jabberwocky.weecology.org/2011/06/27/why-computer-labs-should-never-be-controlled-by-individual-collegesdepartments/#comments</comments>
		<pubDate>Mon, 27 Jun 2011 13:26:00 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[computers]]></category>
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		<category><![CDATA[graduate students]]></category>
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		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=715</guid>
		<description><![CDATA[Some time ago in academia we realized that it didn&#8217;t make sense for individual scientists or even entire departments to maintain their own high performance computing resources. Use of these resources by an individual is intensive, but sporadic, and maintenance of the resources is expensive [1] so the universities soon realized they were better off [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=715&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Some time ago in academia we realized that it didn&#8217;t make sense for individual scientists or even entire departments to maintain their own high performance computing resources. Use of these resources by an individual is intensive, but sporadic, and maintenance of the resources is expensive [1] so the universities soon realized they were better off having centralized high performance computing centers so that computing resources were available when needed and the averaging effects of having large numbers of individuals using the same computers meant that the machines didn&#8217;t spend much time sitting idle. This was obviously a smart decision.</p>
<p>So, why haven&#8217;t universities been smart enough to centralize an even more valuable computational resource, their computer labs?</p>
<p>As any student of <a href="http://jabberwocky.weecology.org/2011/04/04/learning-to-program-like-a-professional-using-software-carpentry/" target="_blank">Software Carpentry</a> will tell you, it is far more important to be able to program well than it is to have access to a really large high performance computing center. This means that the most important computational resource a university has is the classes that teach their students how to program, and the computer labs on which they rely.</p>
<p>At my university [2] all of the computer labs on campus are controlled by either individual departments or individual colleges. This means that if you want to teach a class in one of them you can&#8217;t request it as a room through the normal scheduling process, you have to ask the cognizant university fiefdom for permission. This wouldn&#8217;t be a huge issue, except that in my experience the answer is typically a resounding no. And it&#8217;s not a &#8220;no, where really sorry but the classroom is booked solid with our own classes,&#8221; it&#8217;s &#8220;no, that computer lab is ours, good luck&#8221; [3].</p>
<p>And this means that we end up wasting <em>a lot</em> of expensive university resources. For example, last year I taught in a computer lab &#8220;owned&#8221; by another college [4]. I taught in the second class slot of a four slot afternoon. In the slot before my class there was a class that used the room about four times during the semester (out of 48 class periods). There were no classes in the other two afternoon slots [5]. That means that classes were being taught in the lab only 27% of the time or 2% of the time if I hadn&#8217;t been granted an exception to use the lab [6].</p>
<p>Since computing skills are increasingly critical to many areas of science (and everything else for that matter) this territoriality with respect to computer labs means that they proliferate across campus. The departments/colleges of Computer Science, Engineering, Social Sciences, Natural Resources and Biology [7] all end up creating and maintaining their own computer labs, and those labs end up sitting empty (or being used by students to send email) most of the time. This is horrifyingly inefficient in an era where funds for higher education are increasingly hard to come by and where technology turns over at an ever increasing rate. Which [8] brings me to the title of this post. The solution to this problem is for universities to stop allowing computer labs to be controlled by individual colleges/departments in exactly the same way that most classrooms are not controlled by colleges/departments. Most universities have a central unit that schedules classrooms and classes are fit into the available spaces. There is of course a highly justified bias to putting classes in the buildings of the cognizant department, but large classes in particular may very well not be in the department&#8217;s building. It works this way because if it didn&#8217;t then the university would be wasting huge amounts of space having one or more lecture halls in every department, even if they were only needed a few hours a week. The same issue applies to computer labs, only they are also packed full of expensive electronics. So please universities, for the love of all that is good and right and simply fiscally sound in the world, start treating computer labs like what they are: really valuable and expensive classrooms.</p>
<p>&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;&#8212;-</p>
<p>[1] Think of a single scientist who keeps 10 expensive computers, only uses them a total of 1-2 months per year, but when he does the 10 computers aren&#8217;t really enough so he has to wait a long time to finish the analysis.</p>
<p>[2] And I think the point I&#8217;m about to make is generally true; at least it has been at several other universities I&#8217;ve worked over the years.</p>
<p>[3] Or in some cases something more like &#8220;Frak you. You fraking biologists have no fraking right to teach anyone a fraking thing about fraking computers.&#8221; Needless to say, the individual in question wasn&#8217;t actually saying <a href="http://en.wikipedia.org/wiki/Frak_(expletive)">frak</a>, but this is a family blog.</p>
<p>[4] As a result of a personal favor done for one administrator by another administrator.</p>
<p>[5] I know because I took advantage of this to hold my office hours in the computer lab following class.</p>
<p>[6] To be fair it should be noted that this and other computer labs are often used by students for doing homework (along with other less educationally oriented activities) when classes are not using the rooms, but in this case the classroom was a small part of a much larger lab and since I never witnessed the non-classroom portion of the lab being filled to capacity, the argument stands.</p>
<p>[7] etc., etc., etc.</p>
<p>[8] finally&#8230;</p>
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		<slash:comments>10</slash:comments>
	
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			<media:title type="html">Ethan</media:title>
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		<item>
		<title>Putting the first back in first author</title>
		<link>http://jabberwocky.weecology.org/2011/03/16/putting-the-first-back-in-first-author/</link>
		<comments>http://jabberwocky.weecology.org/2011/03/16/putting-the-first-back-in-first-author/#comments</comments>
		<pubDate>Wed, 16 Mar 2011 15:20:54 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[ecology]]></category>
		<category><![CDATA[publishing]]></category>
		<category><![CDATA[rant]]></category>
		<category><![CDATA[science]]></category>

		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=599</guid>
		<description><![CDATA[An open letter to John Wiley &#38; Sons Inc. Dear Wiley, I like a lot of things that you do, but a few months ago you quietly changed your RSS feeds in a way that is both disrespectful and frankly not good for your business. You started including only the last author&#8217;s name in the [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=599&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p><em><strong>An open letter to John Wiley &amp; Sons Inc.</strong></em></p>
<p>Dear Wiley,</p>
<p>I like a lot of things that you do, but a few months ago you quietly changed your RSS feeds in a way that is both disrespectful and frankly not good for your business. You started including only the last author&#8217;s name in the RSS feed. This is bad idea for three reasons:</p>
<ol>
<li>It shows a complete lack of respect for (or understanding of) a number of scientific disciplines that do not have a strong last author tradition (<a href="http://jabberwocky.weecology.org/2011/01/27/senior-authorship-in-ecology-maybe/" target="_blank">including ecology</a>; a field in which you publish a large proportion of the journals). If you do this for a paper from my field then most of the time you are publishing the name of the least significant contributor.</li>
<li>Even in disciplines (or labs) where there is a last author tradition, not including the name of the (often junior) person who did most of the work is just disrespectful. Yes, maybe you&#8217;ll attract more click-throughs with a more senior name, but the goal in scientific fields has always been to provide credit where credit is due and you are failing to honor that tradition.</li>
<li>Finally (and worst of all from your perspective), you are costing yourself readers. One of the considerations that I make when deciding to read a paper is based on who the authors are. At least in fields like mine I will rarely see a name associated with a paper that is meaningful to me since the last author may well be an undergraduate or a tech.</li>
</ol>
<p>In case you think this is just one person&#8217;s opinion we took a quick <a href="http://jabberwocky.weecology.org/2011/01/27/senior-authorship-in-ecology-maybe/" target="_blank">informal poll</a> a little while ago. Of 37 respondents 100% agree that if you are going to list a single author&#8217;s name with a paper it should be the first author.</p>
<p>So please, either switch back to using the first author&#8217;s name or, better yet, actually list the entire author line. Seeing someone&#8217;s name whose work we respect will encourage us to click-through to the paper regardless of where that name occurs in the author line.</p>
<p>Regards,</p>
<p>Ethan White (and the readers of Jabberwocky Ecology)</p>
<p>P.S. Also, we know that the RSS feed includes the abstract. We don&#8217;t need it in large, bold, capitalized letters at the top of every feed.</p>
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		<slash:comments>3</slash:comments>
	
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			<media:title type="html">Ethan</media:title>
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		<item>
		<title>Some days&#8230;</title>
		<link>http://jabberwocky.weecology.org/2010/07/28/some-days/</link>
		<comments>http://jabberwocky.weecology.org/2010/07/28/some-days/#comments</comments>
		<pubDate>Wed, 28 Jul 2010 15:28:25 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[education]]></category>
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		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=479</guid>
		<description><![CDATA[Some days I really wonder whether the bureaucratic infrastructure at institutions of higher education has any idea whatsoever that their job is to support the research and teaching missions of the university.<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=479&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>Some days I really wonder whether the bureaucratic infrastructure at institutions of higher education has any idea whatsoever that their job is to <em>support</em> the research and teaching missions of the university.</p>
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		<slash:comments>3</slash:comments>
	
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			<media:title type="html">Ethan</media:title>
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		<title>A message to journal editors/managers about RSS feeds</title>
		<link>http://jabberwocky.weecology.org/2009/08/17/a-message-to-journal-editorsmanagers-about-rss-feeds/</link>
		<comments>http://jabberwocky.weecology.org/2009/08/17/a-message-to-journal-editorsmanagers-about-rss-feeds/#comments</comments>
		<pubDate>Tue, 18 Aug 2009 03:57:30 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[ecology]]></category>
		<category><![CDATA[productivity]]></category>
		<category><![CDATA[publishing]]></category>
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		<category><![CDATA[web resources]]></category>

		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=164</guid>
		<description><![CDATA[If you don&#8217;t have an easily accessible RSS feed available (and by easily accessible I mean in the browser&#8217;s address bar on your journal&#8217;s main page) for your journal&#8217;s Table of Contents (TOCs), there is a certain class of readers who will not keep track of you TOCs. This is because receiving this information via [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=164&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<ol>
<li>If you don&#8217;t have an easily accessible RSS feed available (and by easily accessible I mean in the browser&#8217;s address bar on your journal&#8217;s main page) for your journal&#8217;s Table of Contents (TOCs), there is a certain class of readers who will not keep track of you TOCs. This is because receiving this information via email is outdated and inefficient and if you are in the business of content delivery it is, at this point, incompetent for you to not have this option (it&#8217;s kind of like not having a website 10 years ago).</li>
<li>If, for some technophobic reason, you refuse to have an RSS feed, then please, pretty please with suger on top, don&#8217;t hide the ability to subscribe to the TOCs behind a username/password wall. All you need is a box for people to add their email addresses to for subscribing and a prominent unsubscribe link in the emails (if you are really paranoid you can add a confirmation email with a link that needs to be followed to confirm the subscription).</li>
<li>Most importantly. Please, for the love of all that is good and right in the world, DO NOT START AN RSS FEED AND THEN STOP UPDATING IT. Those individuals who track a large number of feeds in their feed readers will not notice that you stopped updating your feed for quite some time. You are losing readers when you do this.</li>
<li>If you have an RSS feed that is easily accessible (congratulations, you&#8217;re ahead of many Elsevier journals) please try to maximize the amount of information it provides. There are three critical pieces of information that should be included in every TOCs feed:
<ol>
<li>The title (you all manage to do this one OK)</li>
<li>All of the authors&#8217; names. Not just the first author. Not just the first and last author. All of the authors. Seriously, part of the decision making process when it comes to choosing whether or not to take a closer look at a paper is who the authors are. So, if you want to maximize the readership of papers, include all of the authors&#8217; names in the RSS feed.</li>
<li>The abstract. I cannot fathom why you would exclude the abstract from your feed, other than to generate click throughs to your website. Since those of you doing this (yes, <em>Ecology</em>, I&#8217;m talking about you) aren&#8217;t running advertising, this isn&#8217;t a good reason, since you can communicate the information just as well in the feed (and if you&#8217;re using website visits as some kind of metric, don&#8217;t worry, you can easily track how many people are subscribed to your feed as well).</li>
</ol>
</li>
</ol>
<p>If this seems a bit harsh, whiny, etc., then keep this in mind. In the last month I had over 1000 new publications come through my feed reader and another 100 or so in email tables of contents. This is an incredible amount of material just to process, let alone read. If journals want readers to pay attention to their papers it is incumbent upon them to make it as easy as possible to sort through this deluge of information and allow their readership to quickly and easily identify papers of interest. Journals that don&#8217;t do this are hurting themselves as well as their readers.</p>
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			<media:title type="html">Ethan</media:title>
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		<title>Experimental ecology is dead, long live experimental ecology!</title>
		<link>http://jabberwocky.weecology.org/2009/08/14/experimental-ecology-is-dead-long-live-experimental-ecology/</link>
		<comments>http://jabberwocky.weecology.org/2009/08/14/experimental-ecology-is-dead-long-live-experimental-ecology/#comments</comments>
		<pubDate>Fri, 14 Aug 2009 17:55:58 +0000</pubDate>
		<dc:creator>Ethan</dc:creator>
				<category><![CDATA[ecology]]></category>
		<category><![CDATA[rant]]></category>

		<guid isPermaLink="false">http://jabberwocky.weecology.org/?p=150</guid>
		<description><![CDATA[I read a handful of experimental ecology papers the other day. I liked some of them and didn&#8217;t like some of them. It wasn&#8217;t that there was anything inherently wrong with the ones I didn&#8217;t like, they just didn&#8217;t fit in with my world view. Yeah, this doesn&#8217;t make any sense to me either, but [...]<img alt="" border="0" src="http://stats.wordpress.com/b.gif?host=jabberwocky.weecology.org&amp;blog=5203072&amp;post=150&amp;subd=jabberwockyecology&amp;ref=&amp;feed=1" width="1" height="1" />]]></description>
			<content:encoded><![CDATA[<p>I read a handful of experimental ecology papers the other day. I liked some of them and didn&#8217;t like some of them. It wasn&#8217;t that there was anything inherently wrong with the ones I didn&#8217;t like, they just didn&#8217;t fit in with my world view.</p>
<p><em>Yeah, this doesn&#8217;t make any sense to me either, but apparently that&#8217;s how we&#8217;re </em><a href="http://evol-eco.blogspot.com/2009/08/macroecology-is-dead-long-live.html" target="_blank"><em>using this phrase these days</em></a><em>.</em></p>
<p>P.S. I was going to let this one go until Ecotone used the original post to question <a href="http://www.esa.org/esablog/?p=1620" target="_blank">&#8220;the reality (or not) of macroecology as its own discipline.&#8221;</a> There&#8217;s nothing wrong with creative titles (we enjoy them here at Jabberwocky), but when contrasted with EEB &amp; Flow&#8217;s other posts from ESA it&#8217;s not surprising that Ecotone took this as being a passive agressive critique of the state of the field. My main concern is that EEB &amp; Flow seems to conflate an important methodological approach with particular interpretations of ecological process resulting from an application of that approach. Just because I disagree with a particular paper using an experiment doesn&#8217;t lead me to have &#8220;an unsure feeling about this field.&#8221; I mean really.</p>
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			<media:title type="html">Ethan</media:title>
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